PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30190.m011276
Common NameLOC8287437, RCOM_1689100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 334aa    MW: 37450.9 Da    PI: 4.7336
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30190.m011276genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY986.2e-31160218259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    +D ++WrKYGqK++kgs++prsYYrC+s  gC ++k+vers++dp++++itY+ eH h 
  30190.m011276 160 SDMWAWRKYGQKPIKGSPYPRSYYRCSSLkGCLARKQVERSSSDPSIFIITYTAEHSHA 218
                    79*************************998****************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-31146220IPR003657WRKY domain
PROSITE profilePS5081132.019154220IPR003657WRKY domain
SuperFamilySSF1182904.05E-26156220IPR003657WRKY domain
SMARTSM007744.7E-36159219IPR003657WRKY domain
PfamPF031063.1E-25161217IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGEFTFMEDW DLEAVVRGCS TNEAFADIMI NNNPPSVLSP LSTLDQDDRQ ELLSSPDFFE  60
FATKDFDYGV EKETYKPLLF YPNQQALSPQ SILSPTSSMS IPSYDGQEPE KLQKKHLFSE  120
SDAPVSCSDD ATPLASKSKR CRKSAQNRVV KHVTADGLSS DMWAWRKYGQ KPIKGSPYPR  180
SYYRCSSLKG CLARKQVERS SSDPSIFIIT YTAEHSHAHP TRRNSLAGST RIKSSMAKQA  240
NKSSEPNKPT IKGECLDTVL PSSITPLSMA STNEDEMVQH VRLKNEEAEE ERILEDSISN  300
QEIVMPDIIF SDELFPSLED FEGLFLDQFS ATVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-19147220174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002509862.10.0PREDICTED: WRKY transcription factor 22
TrEMBLB9RCH80.0B9RCH8_RICCO; WRKY transcription factor, putative
STRINGPOPTR_0003s13250.11e-101(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62173150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-44WRKY family protein